Variant report

Variant	rs4755318
Chromosome Location	chr11:45359269-45359270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10838442	1.00[ASN][1000 genomes]
rs10838450	1.00[ASN][1000 genomes]
rs10838456	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038408	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038412	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11607009	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755319	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755977	1.00[ASN][1000 genomes]
rs4755978	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61880359	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925811	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45354400-45359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:45355200-45361000	Weak transcription	Fetal Kidney	kidney
3	chr11:45355600-45359400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:45355600-45359600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:45355600-45361200	Weak transcription	Fetal Stomach	stomach
6	chr11:45356200-45360600	Weak transcription	Fetal Brain Male	brain
7	chr11:45356400-45361000	Weak transcription	Fetal Brain Female	brain
8	chr11:45357400-45361400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:45358400-45361200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:45359200-45359800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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