Variant report

Variant	rs4755977
Chromosome Location	chr11:45367010-45367011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10838442	1.00[ASN][1000 genomes]
rs10838445	0.85[EUR][1000 genomes]
rs10838450	1.00[ASN][1000 genomes]
rs10838451	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs11038412	0.80[AFR][1000 genomes]
rs2863156	1.00[CHB][hapmap]
rs2863161	1.00[CHB][hapmap]
rs4755318	1.00[ASN][1000 genomes]
rs4755320	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4755321	0.81[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61880359	1.00[ASN][1000 genomes]
rs61882561	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882564	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882566	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882568	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7484258	0.82[EUR][1000 genomes]
rs7925811	1.00[ASN][1000 genomes]
rs7943277	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7943376	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7952613	0.94[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45362200-45367200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:45362200-45368200	Weak transcription	Fetal Brain Female	brain
3	chr11:45362200-45368600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:45362200-45376400	Weak transcription	Brain Germinal Matrix	brain
5	chr11:45363400-45367200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:45364200-45367200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:45364200-45368400	Weak transcription	Fetal Stomach	stomach
8	chr11:45364200-45369000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:45365800-45367600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:45365800-45369000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:45366000-45368400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:45366000-45368400	Weak transcription	Fetal Heart	heart
13	chr11:45366200-45368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:45366400-45367200	Enhancers	Fetal Lung	lung
15	chr11:45366600-45367600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:45366600-45367800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:45366600-45368400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:45366800-45367400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:45366800-45367400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr11:45366800-45368000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr11:45366800-45370600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr11:45367000-45367200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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