Variant report

Variant	rs61882568
Chromosome Location	chr11:45389550-45389551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10838445	0.81[EUR][1000 genomes]
rs10838451	0.82[EUR][1000 genomes]
rs10838456	1.00[ASN][1000 genomes]
rs11038408	1.00[ASN][1000 genomes]
rs11038412	1.00[ASN][1000 genomes]
rs11607009	1.00[ASN][1000 genomes]
rs4755319	1.00[ASN][1000 genomes]
rs4755320	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755321	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755977	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4755978	1.00[ASN][1000 genomes]
rs61882561	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882562	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882563	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882564	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882566	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930399	0.80[AFR][1000 genomes]
rs7943277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45386800-45391000	Weak transcription	Ovary	ovary
2	chr11:45388000-45389800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:45388000-45392200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:45388400-45391000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:45388400-45392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:45388400-45395800	Weak transcription	Liver	Liver
7	chr11:45388800-45389600	Enhancers	Lung	lung
8	chr11:45388800-45392600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:45389000-45390800	Weak transcription	Brain Germinal Matrix	brain
10	chr11:45389000-45391000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:45389000-45391000	Weak transcription	Fetal Brain Male	brain
12	chr11:45389000-45392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:45389000-45392600	Weak transcription	Spleen	Spleen
14	chr11:45389400-45389600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
15	chr11:45389400-45391000	Weak transcription	Fetal Brain Female	brain
16	chr11:45389400-45392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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