Variant report

Variant	rs61882563
Chromosome Location	chr11:45377564-45377565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM11-3	chr11:45377430-45378199	ENSG00000254427
2	lnc-PRDM11-3	chr11:45377249-45378689	NONHSAT019018

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10838445	0.86[EUR][1000 genomes]
rs10838451	0.87[EUR][1000 genomes]
rs10838456	1.00[ASN][1000 genomes]
rs11038408	1.00[ASN][1000 genomes]
rs11038412	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11607009	1.00[ASN][1000 genomes]
rs4755319	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4755320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755321	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4755978	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61882561	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882568	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7484258	0.83[EUR][1000 genomes]
rs7943277	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943376	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952613	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45376400-45377600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr11:45376400-45377600	Active TSS	A549	lung
3	chr11:45376600-45377600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr11:45376600-45377600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:45376600-45377600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:45376600-45377600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:45376600-45377600	Active TSS	Aorta	Aorta
8	chr11:45376600-45377600	Active TSS	Brain Anterior Caudate	brain
9	chr11:45376600-45377600	Flanking Active TSS	Fetal Muscle Leg	muscle
10	chr11:45376600-45377600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr11:45376600-45377600	Active TSS	Rectal Smooth Muscle	rectum
12	chr11:45376600-45377600	ZNF genes & repeats	GM12878-XiMat	blood
13	chr11:45376600-45377600	Active TSS	NH-A	brain
14	chr11:45376600-45377600	Bivalent/Poised TSS	Osteobl	bone
15	chr11:45376600-45377800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:45376600-45377800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:45376600-45377800	Active TSS	Colonic Mucosa	Colon
18	chr11:45376600-45377800	Active TSS	Fetal Muscle Trunk	muscle
19	chr11:45376600-45377800	Active TSS	Ovary	ovary
20	chr11:45376600-45378000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr11:45376800-45377600	Active TSS	H1 Cell Line	embryonic stem cell
22	chr11:45376800-45377600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr11:45376800-45377600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:45376800-45377600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr11:45376800-45377600	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr11:45376800-45377600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:45376800-45377600	Flanking Active TSS	Primary B cells from peripheral blood	blood
28	chr11:45376800-45377600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr11:45376800-45377600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:45376800-45377600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:45376800-45377600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:45376800-45377600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:45376800-45377600	Flanking Active TSS	Liver	Liver
34	chr11:45376800-45377600	Active TSS	Esophagus	oesophagus
35	chr11:45376800-45377600	Active TSS	Fetal Brain Female	brain
36	chr11:45376800-45377600	Active TSS	Left Ventricle	heart
37	chr11:45376800-45377600	Active TSS	HSMM	muscle
38	chr11:45376800-45377800	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr11:45376800-45377800	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr11:45376800-45377800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr11:45376800-45377800	Active TSS	Brain Hippocampus Middle	brain
42	chr11:45376800-45377800	Active TSS	Brain Substantia Nigra	brain
43	chr11:45376800-45377800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr11:45376800-45377800	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr11:45376800-45377800	Active TSS	K562	blood
46	chr11:45376800-45378000	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr11:45376800-45378000	Flanking Active TSS	Fetal Thymus	thymus
48	chr11:45377000-45377600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr11:45377000-45377600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:45377000-45377600	Flanking Active TSS	Primary B cells from cord blood	blood

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