Variant report

Variant	rs11607009
Chromosome Location	chr11:45387653-45387654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10838456	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038412	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755318	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755319	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755320	1.00[ASN][1000 genomes]
rs4755321	1.00[ASN][1000 genomes]
rs4755978	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880359	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61882561	1.00[ASN][1000 genomes]
rs61882562	1.00[ASN][1000 genomes]
rs61882563	1.00[ASN][1000 genomes]
rs61882564	1.00[ASN][1000 genomes]
rs61882566	1.00[ASN][1000 genomes]
rs61882568	1.00[ASN][1000 genomes]
rs7943277	1.00[ASN][1000 genomes]
rs7943376	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45378000-45387800	Weak transcription	Lung	lung
2	chr11:45378200-45387800	Weak transcription	Fetal Brain Male	brain
3	chr11:45384200-45387800	Weak transcription	Fetal Stomach	stomach
4	chr11:45385800-45387800	Weak transcription	Fetal Brain Female	brain
5	chr11:45386000-45387800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:45386800-45391000	Weak transcription	Ovary	ovary
7	chr11:45387200-45387800	Enhancers	Brain Anterior Caudate	brain
8	chr11:45387400-45387800	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:45387400-45387800	Enhancers	Brain Germinal Matrix	brain
10	chr11:45387400-45388000	Enhancers	Brain Angular Gyrus	brain
11	chr11:45387400-45388400	Enhancers	Liver	Liver
12	chr11:45387400-45388400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:45387600-45387800	Flanking Active TSS	Brain Substantia Nigra	brain
14	chr11:45387600-45388200	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr11:45387600-45388200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr11:45387600-45388600	Weak transcription	Spleen	Spleen
17	chr11:45387600-45388800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:45387600-45389000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:45387600-45389000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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