Variant report

Variant	rs7943277
Chromosome Location	chr11:45388832-45388833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr11:45388625-45389094	NT2-D1	testis:	n/a	n/a

Variant related genes	Relation type
ENSG00000255267	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10838451	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs10838456	1.00[ASN][1000 genomes]
rs11038408	1.00[ASN][1000 genomes]
rs11038412	1.00[ASN][1000 genomes]
rs11607009	1.00[ASN][1000 genomes]
rs4755319	1.00[ASN][1000 genomes]
rs4755320	0.87[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755321	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755977	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4755978	1.00[ASN][1000 genomes]
rs61882561	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882562	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882563	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882564	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882566	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930399	0.80[AFR][1000 genomes]
rs7943376	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952613	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45386800-45391000	Weak transcription	Ovary	ovary
2	chr11:45387600-45389000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:45387600-45389000	Enhancers	Fetal Lung	lung
4	chr11:45387800-45389000	Enhancers	Fetal Brain Male	brain
5	chr11:45387800-45389000	Enhancers	Fetal Stomach	stomach
6	chr11:45387800-45389400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:45387800-45389400	Enhancers	Fetal Brain Female	brain
8	chr11:45388000-45389800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:45388000-45392200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:45388200-45389000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:45388200-45389400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:45388400-45389000	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:45388400-45389000	Enhancers	Brain Germinal Matrix	brain
14	chr11:45388400-45391000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:45388400-45392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:45388400-45395800	Weak transcription	Liver	Liver
17	chr11:45388600-45389000	Enhancers	Spleen	Spleen
18	chr11:45388600-45389200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:45388800-45389000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:45388800-45389000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:45388800-45389600	Enhancers	Lung	lung
22	chr11:45388800-45392600	Weak transcription	Brain Anterior Caudate	brain

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