Variant report

Variant	rs4755981
Chromosome Location	chr11:45412486-45412487
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10769141	0.83[AMR][1000 genomes]
rs11602299	0.84[AMR][1000 genomes]
rs2044872	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4755982	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs717653	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs896331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs896332	0.96[EUR][1000 genomes]
rs921456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45405400-45434800	Weak transcription	Right Atrium	heart
2	chr11:45407000-45421000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:45407600-45414000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:45409400-45413000	Enhancers	Brain Germinal Matrix	brain
5	chr11:45409800-45413800	Enhancers	Ovary	ovary
6	chr11:45411000-45412600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:45411200-45417000	Enhancers	Liver	Liver
8	chr11:45411800-45412600	Enhancers	HSMM	muscle
9	chr11:45411800-45413000	Enhancers	Osteobl	bone
10	chr11:45411800-45413600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:45412000-45412600	Enhancers	Fetal Brain Male	brain
12	chr11:45412200-45412600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:45412200-45413800	Flanking Active TSS	HepG2	liver
14	chr11:45412200-45414000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:45412200-45415400	Bivalent Enhancer	Fetal Stomach	stomach
16	chr11:45412200-45417600	Weak transcription	Fetal Brain Female	brain
17	chr11:45412400-45412600	Enhancers	Gastric	stomach
18	chr11:45412400-45412800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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