Variant report

Variant	rs921456
Chromosome Location	chr11:45406718-45406719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1017615	1.00[YRI][hapmap]
rs10769141	0.83[AMR][1000 genomes]
rs11602299	0.84[AMR][1000 genomes]
rs2044872	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4755981	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4755982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs717653	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs896331	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs896332	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45403200-45408400	Enhancers	Brain Germinal Matrix	brain
2	chr11:45403200-45410000	Enhancers	Fetal Thymus	thymus
3	chr11:45403600-45407800	Enhancers	Thymus	Thymus
4	chr11:45403600-45408000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr11:45404000-45406800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:45404200-45407800	Enhancers	Fetal Brain Male	brain
7	chr11:45404800-45407600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr11:45405200-45407000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:45405400-45407000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:45405400-45434800	Weak transcription	Right Atrium	heart
11	chr11:45405600-45407400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:45406000-45406800	Bivalent Enhancer	Fetal Stomach	stomach
13	chr11:45406000-45408800	Enhancers	Fetal Brain Female	brain
14	chr11:45406000-45409200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:45406200-45407000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:45406200-45407000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:45406200-45407000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:45406200-45407200	Bivalent Enhancer	HepG2	liver
19	chr11:45406200-45407400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:45406200-45408600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:45406400-45406800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:45406400-45407600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:45406400-45407600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:45406400-45407600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr11:45406400-45407800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:45406600-45407400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:45406600-45407600	Bivalent Enhancer	Primary T cells from cord blood	blood

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