Variant report

Variant	rs4771272
Chromosome Location	chr13:98036960-98036961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1806507	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2892854	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4771273	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9300407	0.88[JPT][hapmap]
rs9516923	0.82[ASN][1000 genomes]
rs9516925	0.82[ASN][1000 genomes]
rs9516928	0.82[EUR][1000 genomes]
rs9554393	0.82[ASN][1000 genomes]
rs9805513	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
3	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
4	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:98022000-98038600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr13:98022000-98039000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr13:98022000-98043400	Weak transcription	Stomach Mucosa	stomach
9	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
10	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:98022200-98037200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:98022200-98038200	Weak transcription	Dnd41	blood
13	chr13:98022200-98038600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr13:98022200-98042600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr13:98022600-98043800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr13:98023400-98041600	Strong transcription	Liver	Liver
17	chr13:98023600-98045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr13:98024000-98044600	Weak transcription	GM12878-XiMat	blood
19	chr13:98025000-98039200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr13:98026400-98045200	Weak transcription	Fetal Brain Male	brain
21	chr13:98026800-98041200	Strong transcription	HepG2	liver
22	chr13:98027200-98040400	Strong transcription	Fetal Lung	lung
23	chr13:98027800-98037200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr13:98027800-98043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:98027800-98044000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr13:98027800-98048000	Weak transcription	K562	blood
27	chr13:98028000-98038400	Weak transcription	Fetal Thymus	thymus
28	chr13:98028000-98038400	Weak transcription	NHEK	skin
29	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
30	chr13:98028200-98038400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr13:98028200-98046200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
34	chr13:98028400-98037200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr13:98028400-98037200	Weak transcription	HSMMtube	muscle
36	chr13:98028400-98038200	Weak transcription	Pancreas	Pancrea
37	chr13:98028400-98038800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr13:98028400-98041000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr13:98028400-98047600	Weak transcription	HMEC	breast
40	chr13:98028600-98046800	Weak transcription	A549	lung
41	chr13:98028800-98037000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr13:98029200-98038000	Weak transcription	Primary B cells from cord blood	blood
43	chr13:98029400-98037000	Weak transcription	Osteobl	bone
44	chr13:98029400-98038200	Weak transcription	Esophagus	oesophagus
45	chr13:98029400-98039600	Weak transcription	Lung	lung
46	chr13:98029400-98046800	Weak transcription	NHLF	lung
47	chr13:98029600-98043600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr13:98030200-98039600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr13:98031800-98042800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:98032200-98038200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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