Variant report

Variant	rs9516928
Chromosome Location	chr13:98067093-98067094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1360014	0.80[ASN][1000 genomes]
rs1410647	0.89[ASN][1000 genomes]
rs1806507	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs1980897	0.80[ASN][1000 genomes]
rs2892854	0.85[CEU][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs4771272	0.82[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs4771273	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs9300407	0.90[JPT][hapmap]
rs9516929	0.90[ASN][1000 genomes]
rs9516930	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98065200-98074800	Weak transcription	NHDF-Ad	bronchial
2	chr13:98065800-98067600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:98066000-98067400	Enhancers	Brain Angular Gyrus	brain
4	chr13:98066000-98067400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:98066000-98067600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:98066000-98067600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:98066600-98067400	Enhancers	Brain Hippocampus Middle	brain
8	chr13:98066600-98067400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:98066600-98067400	Enhancers	Brain Substantia Nigra	brain
10	chr13:98066600-98067600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:98067000-98067200	Enhancers	Brain Cingulate Gyrus	brain
12	chr13:98067000-98067400	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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