Variant report

Variant	rs1980897
Chromosome Location	chr13:98051595-98051596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1360014	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1410647	0.91[ASN][1000 genomes]
rs1806507	0.89[JPT][hapmap]
rs2892854	0.95[JPT][hapmap]
rs4771272	0.88[JPT][hapmap]
rs4771273	0.95[JPT][hapmap]
rs9300407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516923	0.86[ASN][1000 genomes]
rs9516925	0.86[ASN][1000 genomes]
rs9516928	0.80[ASN][1000 genomes]
rs9516929	0.90[ASN][1000 genomes]
rs9516930	0.88[ASN][1000 genomes]
rs9554393	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
2	chr13:98039600-98054400	Weak transcription	Primary T cells from cord blood	blood
3	chr13:98042000-98052800	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:98044600-98059400	Weak transcription	Left Ventricle	heart
5	chr13:98045400-98059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:98048400-98052200	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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