Variant report

Variant	rs9554393
Chromosome Location	chr13:98056572-98056573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1360014	0.84[ASN][1000 genomes]
rs1410647	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1806507	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1980897	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2892854	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4771272	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4771273	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9300407	0.92[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs9516923	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516925	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516929	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9516930	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98044600-98059400	Weak transcription	Left Ventricle	heart
2	chr13:98045400-98059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr13:98053400-98057000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:98056000-98057200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:98056200-98057200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:98056200-98057200	Enhancers	Fetal Lung	lung
7	chr13:98056200-98057200	Enhancers	NHDF-Ad	bronchial
8	chr13:98056400-98056600	Enhancers	Psoas Muscle	Psoas
9	chr13:98056400-98056800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:98056400-98057000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr13:98056400-98057000	Enhancers	Osteobl	bone
12	chr13:98056400-98057200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:98056400-98057200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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