Variant report

Variant	rs4780225
Chromosome Location	chr15:34460417-34460418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10851947	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639176	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164623	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4587944	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163031	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039431	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34453600-34461000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34454000-34477400	Weak transcription	HSMM	muscle
4	chr15:34454200-34497800	Weak transcription	Osteobl	bone
5	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
6	chr15:34454800-34465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:34455000-34460600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:34455000-34460800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:34455000-34461400	Weak transcription	Primary T cells from cord blood	blood
11	chr15:34455000-34463400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:34455200-34460600	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:34455200-34464400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:34455200-34464600	Weak transcription	Ovary	ovary
15	chr15:34455200-34464600	Weak transcription	Thymus	Thymus
16	chr15:34455600-34463600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:34458600-34462000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr15:34458600-34463400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:34458800-34466800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:34459000-34464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:34459400-34464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:34459600-34464800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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