Variant report
| Variant | rs480240 |
|---|---|
| Chromosome Location | chr6:75246534-75246535 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10943198 | 0.81[ASN][1000 genomes] |
| rs1167368 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1167369 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2785676 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs487576 | 0.86[AMR][1000 genomes] |
| rs491352 | 0.83[AMR][1000 genomes] |
| rs492212 | 0.86[AMR][1000 genomes] |
| rs512429 | 0.86[AMR][1000 genomes] |
| rs523610 | 0.84[ASN][1000 genomes] |
| rs545353 | 0.84[AMR][1000 genomes] |
| rs554312 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57589995 | 0.86[AMR][1000 genomes] |
| rs6902731 | 0.81[ASN][1000 genomes] |
| rs6904232 | 0.80[ASN][1000 genomes] |
| rs6909286 | 0.80[ASN][1000 genomes] |
| rs6909742 | 0.80[ASN][1000 genomes] |
| rs6921818 | 0.81[ASN][1000 genomes] |
| rs6925784 | 0.86[ASN][1000 genomes] |
| rs6925863 | 0.81[ASN][1000 genomes] |
| rs9293972 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9341484 | 0.81[ASN][1000 genomes] |
| rs9343190 | 0.81[ASN][1000 genomes] |
| rs9350561 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917283 | chr6:75234428-75641440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv830694 | chr6:75245483-75446282 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75245000-75246800 | Enhancers | HepG2 | liver |
| 2 | chr6:75246000-75247200 | Weak transcription | A549 | lung |
