Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1041657	0.84[CHB][hapmap]
rs10943198	0.81[ASN][1000 genomes]
rs1167369	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1167371	0.84[CHB][hapmap]
rs2785676	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2785684	0.83[CHB][hapmap]
rs480240	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs487576	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs491352	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs492212	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs512429	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs523610	0.89[ASN][1000 genomes]
rs545353	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs554312	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57589995	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6902731	0.81[ASN][1000 genomes]
rs6904232	0.80[ASN][1000 genomes]
rs6909286	0.80[ASN][1000 genomes]
rs6909742	0.80[ASN][1000 genomes]
rs6921818	0.81[ASN][1000 genomes]
rs6925784	0.86[ASN][1000 genomes]
rs6925863	0.81[ASN][1000 genomes]
rs9293972	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9341484	0.81[ASN][1000 genomes]
rs9343190	0.81[ASN][1000 genomes]
rs9350561	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75258600-75261200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75258600-75283400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:75260800-75261800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:75260800-75262400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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