Variant report

Variant	rs4815303
Chromosome Location	chr20:24720864-24720865
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24716951..24718615-chr20:24720507..24722408,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12480651	0.88[EUR][1000 genomes]
rs226680	1.00[JPT][hapmap]
rs226681	1.00[JPT][hapmap]
rs4813538	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4813539	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4813540	0.90[EUR][1000 genomes]
rs4815308	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4815312	0.88[EUR][1000 genomes]
rs4815315	0.90[EUR][1000 genomes]
rs55684957	0.89[ASN][1000 genomes]
rs56103836	0.89[EUR][1000 genomes]
rs6036904	0.89[EUR][1000 genomes]
rs6036910	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6036911	0.87[EUR][1000 genomes]
rs6049933	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049943	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049956	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049971	0.90[EUR][1000 genomes]
rs6049976	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs6049977	0.88[EUR][1000 genomes]
rs6049978	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs6049983	0.89[EUR][1000 genomes]
rs61059580	0.88[EUR][1000 genomes]
rs6114868	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs7264934	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7271933	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73335420	0.89[EUR][1000 genomes]
rs73335440	0.89[EUR][1000 genomes]
rs73335460	0.87[EUR][1000 genomes]
rs73612620	0.88[EUR][1000 genomes]
rs743191	0.88[EUR][1000 genomes]
rs8114459	0.89[ASN][1000 genomes]
rs8116150	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24716200-24723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:24717400-24727600	Enhancers	Fetal Thymus	thymus
3	chr20:24718200-24723400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr20:24718400-24723800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:24719000-24721400	Enhancers	Fetal Kidney	kidney
6	chr20:24720000-24721200	Active TSS	Thymus	Thymus
7	chr20:24720000-24722400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:24720000-24726600	Weak transcription	Spleen	Spleen
9	chr20:24720800-24721200	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links