Variant report

Variant	rs7271933
Chromosome Location	chr20:24733016-24733017
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24726357..24729522-chr20:24732233..24738144,6	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12480651	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4813538	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4813539	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4813540	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4815303	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815308	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4815312	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4815315	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55684957	0.89[ASN][1000 genomes]
rs56103836	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6036904	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6036910	0.92[EUR][1000 genomes]
rs6036911	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6049933	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049943	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049956	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6049971	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6049976	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049977	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049978	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049983	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61059580	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7264934	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73335420	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73335440	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73335460	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612620	0.92[EUR][1000 genomes]
rs743191	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8114459	0.89[ASN][1000 genomes]
rs8116150	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24727400-24734000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr20:24727400-24743400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24728200-24733200	Weak transcription	Pancreas	Pancrea
4	chr20:24729000-24734800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr20:24732400-24735000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:24732800-24737600	Enhancers	Fetal Thymus	thymus
7	chr20:24733000-24735200	Enhancers	Dnd41	blood
8	chr20:24733000-24736800	Enhancers	Thymus	Thymus

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