Variant report

Variant	rs4832006
Chromosome Location	chr2:85964356-85964357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:85963690..85965421-chr2:86040273..86041784,2	MCF-7	breast:
2	chr2:85963183..85964846-chr2:86037583..86040110,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1356621	0.83[CHD][hapmap];0.83[GIH][hapmap];0.83[ASN][1000 genomes]
rs1356623	0.83[GIH][hapmap];0.80[ASN][1000 genomes]
rs1356624	0.80[ASN][1000 genomes]
rs1465822	0.83[GIH][hapmap]
rs1465823	0.83[GIH][hapmap]
rs2118401	0.83[GIH][hapmap]
rs2176625	0.93[EUR][1000 genomes]
rs4832007	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4832008	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4832188	0.94[EUR][1000 genomes]
rs4832190	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4832191	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6727520	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6735639	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735655	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4832006	CAPG	cis	parietal	SCAN

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85941200-85967400	Weak transcription	Esophagus	oesophagus
2	chr2:85955200-85966400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr2:85958600-85965600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr2:85959200-85968000	Weak transcription	Fetal Heart	heart
5	chr2:85959400-85964400	Enhancers	Psoas Muscle	Psoas
6	chr2:85960400-85966400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:85960800-85965600	Enhancers	Colon Smooth Muscle	Colon
8	chr2:85960800-85968200	Weak transcription	Right Ventricle	heart
9	chr2:85961000-85966200	Enhancers	NHDF-Ad	bronchial
10	chr2:85961400-85967200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:85961600-85964800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:85961600-85966000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:85961600-85968000	Weak transcription	Left Ventricle	heart
14	chr2:85961800-85964800	Weak transcription	HSMMtube	muscle
15	chr2:85961800-85965200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:85962000-85965800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:85962200-85964400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:85962200-85965400	Enhancers	Osteobl	bone
19	chr2:85962200-85966200	Enhancers	A549	lung
20	chr2:85962400-85966600	Enhancers	Fetal Stomach	stomach
21	chr2:85962400-85968600	Enhancers	Fetal Lung	lung
22	chr2:85963000-85964400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr2:85963000-85965600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:85963000-85966000	Enhancers	NHLF	lung
25	chr2:85963000-85967200	Weak transcription	Stomach Mucosa	stomach
26	chr2:85963200-85964800	Weak transcription	Brain Anterior Caudate	brain
27	chr2:85963200-85964800	Weak transcription	Fetal Kidney	kidney
28	chr2:85963200-85968000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:85963200-85968400	Weak transcription	Gastric	stomach
30	chr2:85963400-85964800	Weak transcription	Brain Hippocampus Middle	brain
31	chr2:85963400-85969200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr2:85963600-85964400	Enhancers	Adipose Nuclei	Adipose
33	chr2:85963600-85965800	Enhancers	HSMM	muscle
34	chr2:85963800-85964400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:85963800-85964600	Enhancers	Rectal Smooth Muscle	rectum
36	chr2:85963800-85965000	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr2:85963800-85965400	Enhancers	Aorta	Aorta
38	chr2:85963800-85965800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:85963800-85965800	Enhancers	Ovary	ovary
40	chr2:85963800-85966400	Enhancers	Right Atrium	heart
41	chr2:85964000-85964400	Bivalent Enhancer	Placenta	Placenta
42	chr2:85964000-85964400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr2:85964000-85964400	Enhancers	Hela-S3	cervix
44	chr2:85964000-85964800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:85964000-85964800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr2:85964000-85964800	Weak transcription	HUVEC	blood vessel
47	chr2:85964000-85965200	Enhancers	Stomach Smooth Muscle	stomach
48	chr2:85964000-85965600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr2:85964000-85966000	Enhancers	Fetal Muscle Trunk	muscle
50	chr2:85964200-85964400	Enhancers	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links