Variant report

Variant	rs4832190
Chromosome Location	chr2:85971397-85971398
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:85970891..85973881-chr2:85976191..85979014,2	K562	blood:
2	chr2:85956902..85958870-chr2:85969528..85972246,2	K562	blood:

Variant related genes	Relation type
ENSG00000168874	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1111527	0.93[CEU][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs11126998	0.93[CEU][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1356621	0.93[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs1356622	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1356623	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1356624	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1465822	0.93[CEU][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1465823	0.93[CEU][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1473275	0.93[CEU][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1568310	0.93[CEU][hapmap]
rs2118401	0.93[CEU][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2176625	0.88[EUR][1000 genomes]
rs2366816	0.81[ASN][1000 genomes]
rs4832006	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4832007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832188	0.89[EUR][1000 genomes]
rs4832191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6727520	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6735639	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6735655	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs732155	0.93[CEU][hapmap]
rs7557287	0.81[ASN][1000 genomes]
rs7567852	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1012593	chr2:85966323-85997189	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85965000-85973400	Enhancers	Fetal Muscle Leg	muscle
2	chr2:85966800-85972200	Enhancers	Lung	lung
3	chr2:85967200-85972400	Enhancers	Stomach Mucosa	stomach
4	chr2:85967400-85971400	Enhancers	Esophagus	oesophagus
5	chr2:85968000-85971600	Enhancers	Pancreas	Pancrea
6	chr2:85968000-85971600	Enhancers	NHDF-Ad	bronchial
7	chr2:85968000-85972200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:85968000-85972200	Enhancers	NHLF	lung
9	chr2:85968000-85972600	Enhancers	Fetal Muscle Trunk	muscle
10	chr2:85968000-85974600	Enhancers	Left Ventricle	heart
11	chr2:85968200-85971400	Enhancers	Fetal Brain Male	brain
12	chr2:85968200-85972400	Enhancers	HUVEC	blood vessel
13	chr2:85968200-85973200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr2:85968200-85973800	Enhancers	Right Ventricle	heart
15	chr2:85968200-85974200	Enhancers	Right Atrium	heart
16	chr2:85968400-85971600	Enhancers	Spleen	Spleen
17	chr2:85968400-85973400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:85968600-85971400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:85968600-85971600	Bivalent Enhancer	Fetal Intestine Small	intestine
20	chr2:85969000-85971600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:85969000-85972600	Enhancers	Fetal Stomach	stomach
22	chr2:85969200-85971600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:85969200-85972000	Enhancers	Brain Substantia Nigra	brain
24	chr2:85969200-85972800	Enhancers	Fetal Kidney	kidney
25	chr2:85969600-85972000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:85969600-85972000	Enhancers	HSMM	muscle
27	chr2:85969600-85972000	Enhancers	HSMMtube	muscle
28	chr2:85969600-85972000	Enhancers	Osteobl	bone
29	chr2:85969600-85972800	Enhancers	Liver	Liver
30	chr2:85969600-85973000	Enhancers	NH-A	brain
31	chr2:85969600-85973600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr2:85969600-85974200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr2:85969800-85971600	Enhancers	Gastric	stomach
34	chr2:85969800-85971600	Enhancers	Psoas Muscle	Psoas
35	chr2:85969800-85971600	Bivalent Enhancer	GM12878-XiMat	blood
36	chr2:85969800-85971800	Enhancers	Small Intestine	intestine
37	chr2:85969800-85972800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:85969800-85973000	Bivalent Enhancer	Fetal Intestine Large	intestine
39	chr2:85969800-85973800	Enhancers	Brain Angular Gyrus	brain
40	chr2:85969800-85973800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr2:85970000-85972200	Enhancers	Ovary	ovary
42	chr2:85970200-85971400	Enhancers	Brain Germinal Matrix	brain
43	chr2:85970200-85971600	Enhancers	Aorta	Aorta
44	chr2:85970200-85972400	Bivalent Enhancer	Placenta	Placenta
45	chr2:85970200-85972600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr2:85970200-85973400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:85970400-85971400	Enhancers	Duodenum Mucosa	Duodenum
48	chr2:85970400-85972000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:85970400-85972000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:85970400-85972000	Enhancers	Brain Anterior Caudate	brain

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