Variant report

Variant	rs6735639
Chromosome Location	chr2:85967773-85967774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85964481..85966686-chr2:85966953..85969412,2	K562	blood:
2	chr2:85960025..85963728-chr2:85966554..85970726,5	MCF-7	breast:
3	chr2:85957921..85961748-chr2:85964446..85969197,5	MCF-7	breast:
4	chr2:85965048..85966910-chr2:85967176..85969800,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1356621	0.83[ASN][1000 genomes]
rs1356623	0.80[ASN][1000 genomes]
rs1356624	0.80[ASN][1000 genomes]
rs2176625	0.92[EUR][1000 genomes]
rs4832006	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832007	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4832008	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4832188	0.93[EUR][1000 genomes]
rs4832190	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4832191	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6727520	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6735655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1012593	chr2:85966323-85997189	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85959200-85968000	Weak transcription	Fetal Heart	heart
2	chr2:85960800-85968200	Weak transcription	Right Ventricle	heart
3	chr2:85961600-85968000	Weak transcription	Left Ventricle	heart
4	chr2:85962400-85968600	Enhancers	Fetal Lung	lung
5	chr2:85963200-85968000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:85963200-85968400	Weak transcription	Gastric	stomach
7	chr2:85963400-85969200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:85964200-85968800	Enhancers	Brain Substantia Nigra	brain
9	chr2:85964400-85968000	Weak transcription	Hela-S3	cervix
10	chr2:85964400-85968200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:85964400-85968200	Weak transcription	Colonic Mucosa	Colon
12	chr2:85964400-85968200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:85964400-85968600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:85964800-85968600	Enhancers	Brain Cingulate Gyrus	brain
15	chr2:85965000-85973400	Enhancers	Fetal Muscle Leg	muscle
16	chr2:85965200-85968000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr2:85965200-85968200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:85965400-85968200	Weak transcription	HUVEC	blood vessel
19	chr2:85965400-85968400	Weak transcription	Osteobl	bone
20	chr2:85965600-85967800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:85965600-85967800	Weak transcription	Colon Smooth Muscle	Colon
22	chr2:85965600-85968000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:85965600-85968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:85965800-85968000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:85965800-85968000	Weak transcription	HSMM	muscle
26	chr2:85966000-85968000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:85966000-85968000	Weak transcription	NHLF	lung
28	chr2:85966200-85968000	Weak transcription	NHDF-Ad	bronchial
29	chr2:85966200-85968200	Weak transcription	HSMMtube	muscle
30	chr2:85966200-85968400	Weak transcription	Spleen	Spleen
31	chr2:85966400-85968200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:85966400-85968200	Weak transcription	Right Atrium	heart
33	chr2:85966600-85968000	Weak transcription	Fetal Stomach	stomach
34	chr2:85966600-85968400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:85966800-85968200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr2:85966800-85972200	Enhancers	Lung	lung
37	chr2:85967000-85967800	ZNF genes & repeats	A549	lung
38	chr2:85967000-85968400	Enhancers	Brain Hippocampus Middle	brain
39	chr2:85967000-85968600	Enhancers	Brain Anterior Caudate	brain
40	chr2:85967000-85968600	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr2:85967200-85968200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr2:85967200-85968400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr2:85967200-85969400	Enhancers	Brain Angular Gyrus	brain
44	chr2:85967200-85972400	Enhancers	Stomach Mucosa	stomach
45	chr2:85967400-85967800	Weak transcription	Psoas Muscle	Psoas
46	chr2:85967400-85968600	Enhancers	Liver	Liver
47	chr2:85967400-85968600	Enhancers	Brain Germinal Matrix	brain
48	chr2:85967400-85968800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr2:85967400-85968800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:85967400-85969000	Enhancers	Aorta	Aorta

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