Variant report

Variant	rs4835868
Chromosome Location	chr5:124609843-124609844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11241799	0.83[EUR][1000 genomes]
rs11740444	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11748971	0.88[EUR][1000 genomes]
rs13176117	0.81[EUR][1000 genomes]
rs13184952	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186616	0.81[EUR][1000 genomes]
rs1347924	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34584680	0.81[EUR][1000 genomes]
rs34871761	0.81[EUR][1000 genomes]
rs6595603	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6892733	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124599800-124613400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:124604200-124612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124605800-124611800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:124608400-124612800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:124608800-124612600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:124609000-124610200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:124609000-124614800	Enhancers	HUVEC	blood vessel
8	chr5:124609200-124610000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:124609200-124610800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:124609200-124611000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:124609200-124612800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:124609200-124613600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:124609400-124610000	Weak transcription	Fetal Heart	heart
14	chr5:124609400-124610800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:124609400-124611200	Weak transcription	Brain Germinal Matrix	brain
16	chr5:124609600-124610600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:124609600-124613400	Weak transcription	Stomach Mucosa	stomach
18	chr5:124609600-124614200	Enhancers	Hela-S3	cervix
19	chr5:124609800-124611000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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