Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124584569..124586370-chr5:124590104..124592665,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11241799	0.82[EUR][1000 genomes]
rs11748971	0.84[EUR][1000 genomes]
rs13157669	0.82[ASN][1000 genomes]
rs13172476	0.82[ASN][1000 genomes]
rs13176117	0.82[EUR][1000 genomes]
rs13177664	0.82[ASN][1000 genomes]
rs13184952	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13185858	0.88[ASN][1000 genomes]
rs13186616	0.83[EUR][1000 genomes]
rs1347924	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1439581	0.82[ASN][1000 genomes]
rs17152498	0.90[JPT][hapmap]
rs17152511	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17152519	0.82[ASN][1000 genomes]
rs17152524	0.82[ASN][1000 genomes]
rs17152532	0.82[ASN][1000 genomes]
rs17152545	0.82[ASN][1000 genomes]
rs17152569	0.88[ASN][1000 genomes]
rs17152577	0.82[ASN][1000 genomes]
rs17152579	0.82[ASN][1000 genomes]
rs2408379	0.82[ASN][1000 genomes]
rs34584680	0.83[EUR][1000 genomes]
rs34833831	0.82[ASN][1000 genomes]
rs34871761	0.83[EUR][1000 genomes]
rs34892968	0.88[ASN][1000 genomes]
rs35073242	0.82[ASN][1000 genomes]
rs35108894	0.82[ASN][1000 genomes]
rs35654224	0.82[ASN][1000 genomes]
rs35802525	0.82[ASN][1000 genomes]
rs35914668	0.82[ASN][1000 genomes]
rs36050183	0.82[ASN][1000 genomes]
rs4835868	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6595603	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6892733	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7721989	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11740444	LMNB1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124583600-124591800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:124587000-124594400	Weak transcription	Psoas Muscle	Psoas
3	chr5:124589600-124594400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:124590600-124596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:124591200-124593000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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