Variant report
Variant | rs483606 |
---|---|
Chromosome Location | chr6:120224833-120224834 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:120223179..120225783-chr6:120228744..120232023,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1319019 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1755514 | 0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2094388 | 0.99[ASN][1000 genomes] |
rs2104591 | 0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2225118 | 0.99[ASN][1000 genomes] |
rs516700 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs550566 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs552696 | 0.91[EUR][1000 genomes] |
rs566562 | 0.96[ASN][1000 genomes] |
rs574133 | 0.99[ASN][1000 genomes] |
rs6569093 | 0.99[ASN][1000 genomes] |
rs693631 | 0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7773146 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7773183 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9320728 | 0.93[EUR][1000 genomes] |
rs9387693 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9481970 | 0.89[AFR][1000 genomes] |
rs982773 | 0.93[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv886572 | chr6:120165475-120284480 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | esv2763951 | chr6:120195400-120297444 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | esv2830171 | chr6:120200969-120233977 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:120216200-120230600 | Weak transcription | Fetal Lung | lung |