Variant report

Variant	rs982773
Chromosome Location	chr6:120285711-120285712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1319019	0.93[EUR][1000 genomes]
rs1755514	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2104591	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs483606	0.93[EUR][1000 genomes]
rs516700	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs550566	0.92[EUR][1000 genomes]
rs552696	0.89[EUR][1000 genomes]
rs693631	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773146	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7773183	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9320728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387693	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763951	chr6:120195400-120297444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886573	chr6:120284480-120409492	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120279000-120288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:120282800-120288400	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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