Variant report

Variant	rs9320728
Chromosome Location	chr6:120281533-120281534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1319019	0.93[EUR][1000 genomes]
rs1755514	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2104591	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs483606	0.93[EUR][1000 genomes]
rs516700	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs550566	0.92[EUR][1000 genomes]
rs552696	0.89[EUR][1000 genomes]
rs693631	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773146	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7773183	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9387693	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs982773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2763951	chr6:120195400-120297444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120279000-120288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:120280200-120283600	Weak transcription	Fetal Heart	heart
3	chr6:120280800-120283800	Enhancers	Fetal Brain Male	brain
4	chr6:120281000-120281600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:120281000-120281800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:120281000-120283400	Enhancers	Fetal Brain Female	brain
7	chr6:120281200-120281600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:120281200-120281600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:120281200-120281600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:120281200-120281600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:120281200-120281800	Enhancers	Brain Germinal Matrix	brain
12	chr6:120281200-120282000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr6:120281200-120282200	Enhancers	Adipose Nuclei	Adipose
14	chr6:120281400-120281600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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