Variant report

Variant	rs4841277
Chromosome Location	chr8:9945470-9945471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11249968	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11249969	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11249970	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11785434	0.84[EUR][1000 genomes]
rs12155541	0.88[EUR][1000 genomes]
rs12545826	0.90[ASN][1000 genomes]
rs12550614	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13250499	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13261836	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279619	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1564808	0.84[EUR][1000 genomes]
rs2409632	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2628138	0.84[EUR][1000 genomes]
rs3735823	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4841279	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs685218	0.82[EUR][1000 genomes]
rs6981546	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6983566	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7012221	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7831989	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs814427	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
2	chr8:9929600-9947200	Weak transcription	Aorta	Aorta
3	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
4	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:9941600-9947200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:9942000-9947200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:9943800-9945800	Enhancers	HMEC	breast
8	chr8:9944200-9945800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:9944200-9947800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:9944400-9945800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:9944400-9945800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:9944400-9945800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr8:9944600-9945800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:9944800-9945600	Enhancers	Primary B cells from cord blood	blood
15	chr8:9944800-9945800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:9944800-9946200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:9945200-9945800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr8:9945200-9945800	Enhancers	NHEK	skin
19	chr8:9945200-9947000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:9945200-9947000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:9945200-9947000	Weak transcription	NH-A	brain
22	chr8:9945200-9947200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:9945200-9947200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:9945200-9947200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:9945200-9947800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:9945200-9950000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr8:9945400-9945800	Enhancers	Primary B cells from peripheral blood	blood

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