Variant report

Variant	rs7831989
Chromosome Location	chr8:9947318-9947319
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11249968	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11249969	0.89[EUR][1000 genomes]
rs11249970	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11785434	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12155541	0.87[EUR][1000 genomes]
rs12545826	0.89[ASN][1000 genomes]
rs12550614	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13250499	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13261836	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279619	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1564808	0.83[EUR][1000 genomes]
rs2409632	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2628138	0.84[EUR][1000 genomes]
rs3735823	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4841277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841279	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs685218	0.82[EUR][1000 genomes]
rs6981546	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6983566	0.80[ASN][1000 genomes]
rs7012221	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7832431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs814427	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
2	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
3	chr8:9944200-9947800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:9945200-9947800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:9945200-9950000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:9946800-9948200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:9947000-9947800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:9947000-9948000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:9947000-9948000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:9947000-9948000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:9947000-9948200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:9947000-9948200	Enhancers	NH-A	brain
13	chr8:9947000-9948200	Enhancers	NHEK	skin
14	chr8:9947000-9948400	Enhancers	HMEC	breast
15	chr8:9947200-9947400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr8:9947200-9947400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:9947200-9947400	Flanking Active TSS	Osteobl	bone
18	chr8:9947200-9947600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:9947200-9947800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:9947200-9947800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:9947200-9947800	Enhancers	Aorta	Aorta
22	chr8:9947200-9947800	Enhancers	Left Ventricle	heart
23	chr8:9947200-9948000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:9947200-9948000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr8:9947200-9948000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr8:9947200-9948000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:9947200-9948000	Enhancers	HSMM	muscle
28	chr8:9947200-9948200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:9947200-9948200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:9947200-9948200	Enhancers	NHDF-Ad	bronchial
31	chr8:9947200-9948600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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