Variant report

Variant	rs4844527
Chromosome Location	chr1:210574370-210574371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1111020	0.86[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs11119482	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2066721	0.96[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2073039	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2076516	0.82[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2143441	0.88[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs3765863	0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs4844525	0.87[EUR][1000 genomes]
rs4844526	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4845011	0.83[EUR][1000 genomes]
rs6540592	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6540593	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6663590	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6685791	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6693035	0.87[EUR][1000 genomes]
rs6693338	0.88[EUR][1000 genomes]
rs910033	0.88[LWK][hapmap];0.91[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4844527	HHAT,LOC100129235,LOC100131032	cis	brain	BrainEAC
rs4844527	HHAT	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
7	chr1:210570400-210574400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:210571200-210586200	Weak transcription	Colonic Mucosa	Colon
9	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:210571400-210591400	Weak transcription	Ovary	ovary
11	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:210573200-210574400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:210573400-210574400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:210573400-210574400	Enhancers	HSMM	muscle
15	chr1:210573400-210574600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:210573600-210574400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:210573600-210574400	Enhancers	Right Ventricle	heart
18	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
19	chr1:210573800-210574400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:210573800-210574400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:210573800-210574400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:210573800-210574400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:210573800-210574400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:210573800-210574400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:210573800-210574400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:210573800-210574400	Enhancers	HSMMtube	muscle
27	chr1:210573800-210574400	Enhancers	Osteobl	bone
28	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
29	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
30	chr1:210574000-210574400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:210574000-210574400	Enhancers	Colon Smooth Muscle	Colon
32	chr1:210574000-210578400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:210574000-210579200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:210574000-210586600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr1:210574200-210574400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:210574200-210574400	Enhancers	Stomach Smooth Muscle	stomach
37	chr1:210574200-210574600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr1:210574200-210578200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:210574200-210581000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links