Variant report

Variant	rs4845059
Chromosome Location	chr1:210769565-210769566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10779539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10863846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11119545	1.00[AMR][1000 genomes]
rs11119548	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12145420	1.00[AMR][1000 genomes]
rs4240838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4326622	1.00[AMR][1000 genomes]
rs4357526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4369231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4402133	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405138	1.00[AMR][1000 genomes]
rs4528195	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4565714	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845057	1.00[AMR][1000 genomes]
rs4845058	1.00[AMR][1000 genomes]
rs4845060	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845061	1.00[AMR][1000 genomes]
rs4845062	1.00[AMR][1000 genomes]
rs4845063	1.00[AMR][1000 genomes]
rs4845064	1.00[AMR][1000 genomes]
rs6540608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6540609	1.00[AMR][1000 genomes]
rs6682840	1.00[AMR][1000 genomes]
rs6693375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210756200-210771800	Weak transcription	Left Ventricle	heart
2	chr1:210761400-210771600	Weak transcription	Gastric	stomach
3	chr1:210761600-210770400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:210762400-210770400	Weak transcription	HSMM	muscle
5	chr1:210763200-210769600	Weak transcription	A549	lung
6	chr1:210763200-210770400	Weak transcription	Osteobl	bone
7	chr1:210763600-210770000	Weak transcription	HSMMtube	muscle
8	chr1:210763800-210770200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:210768200-210770200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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