Variant report

Variant	rs4851959
Chromosome Location	chr2:98919689-98919690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98903777..98907619-chr2:98918307..98922639,4	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10172281	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10176056	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10181000	0.83[EUR][1000 genomes]
rs10190336	0.82[ASN][1000 genomes]
rs10201994	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10202618	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10203437	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124121	0.85[ASN][1000 genomes]
rs11889349	0.80[ASN][1000 genomes]
rs11891512	0.80[ASN][1000 genomes]
rs11901562	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12478763	0.80[ASN][1000 genomes]
rs12478769	0.80[ASN][1000 genomes]
rs12624294	0.98[ASN][1000 genomes]
rs12712256	0.90[ASN][1000 genomes]
rs12993718	0.80[ASN][1000 genomes]
rs13013876	0.80[ASN][1000 genomes]
rs13033263	0.80[ASN][1000 genomes]
rs13415414	0.98[ASN][1000 genomes]
rs13427344	0.84[EUR][1000 genomes]
rs13428221	0.85[ASN][1000 genomes]
rs1466944	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1504679	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17427684	0.96[ASN][1000 genomes]
rs17428056	0.98[ASN][1000 genomes]
rs17493655	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17493788	0.98[ASN][1000 genomes]
rs1875880	0.96[ASN][1000 genomes]
rs2055591	0.80[EUR][1000 genomes]
rs2202387	0.96[ASN][1000 genomes]
rs2221416	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2292118	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3731659	1.00[ASN][1000 genomes]
rs4374424	0.80[ASN][1000 genomes]
rs4389366	0.90[ASN][1000 genomes]
rs4477970	0.80[ASN][1000 genomes]
rs4479470	0.80[ASN][1000 genomes]
rs4494805	0.80[ASN][1000 genomes]
rs4632400	0.80[ASN][1000 genomes]
rs4851122	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4851123	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4851124	1.00[ASN][1000 genomes]
rs4851952	0.80[ASN][1000 genomes]
rs4851954	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4851955	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4851960	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56320609	0.81[ASN][1000 genomes]
rs60924437	0.80[EUR][1000 genomes]
rs62156263	0.80[EUR][1000 genomes]
rs62156264	0.80[EUR][1000 genomes]
rs62157914	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6543419	0.80[ASN][1000 genomes]
rs6543459	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66464436	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6715989	0.98[ASN][1000 genomes]
rs6725543	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6742930	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750975	1.00[ASN][1000 genomes]
rs6754222	0.84[EUR][1000 genomes]
rs72933220	0.98[ASN][1000 genomes]
rs7571110	0.84[EUR][1000 genomes]
rs7572757	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7574218	0.80[ASN][1000 genomes]
rs7578802	0.80[ASN][1000 genomes]
rs7589018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7598554	0.90[ASN][1000 genomes]
rs7606070	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs937726	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98917000-98926200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:98917200-98924400	Weak transcription	Gastric	stomach
3	chr2:98918800-98928600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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