Variant report

Variant	rs62156264
Chromosome Location	chr2:98964466-98964467
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10172281	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10181000	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10190679	0.97[ASN][1000 genomes]
rs10201994	0.85[AMR][1000 genomes]
rs10210685	0.97[ASN][1000 genomes]
rs13394706	0.99[ASN][1000 genomes]
rs13408372	0.99[ASN][1000 genomes]
rs13427344	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13428221	0.90[ASN][1000 genomes]
rs13432099	0.97[ASN][1000 genomes]
rs1466944	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17429208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2055591	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2102270	0.99[ASN][1000 genomes]
rs2292118	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4851953	0.80[ASN][1000 genomes]
rs4851959	0.80[EUR][1000 genomes]
rs4851960	0.81[EUR][1000 genomes]
rs56320609	0.95[ASN][1000 genomes]
rs60924437	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62156263	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464436	0.80[EUR][1000 genomes]
rs6742930	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6747410	0.80[ASN][1000 genomes]
rs6754222	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72819909	0.97[ASN][1000 genomes]
rs7571001	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7571110	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7580008	0.99[ASN][1000 genomes]
rs7586663	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7589018	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1010466	chr2:98938886-98998109	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1013617	chr2:98943377-99004173	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98962400-98964800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr2:98962600-98965000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr2:98962600-98965200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:98962600-98965200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr2:98962800-98964600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
6	chr2:98962800-98964800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr2:98962800-98964800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:98962800-98964800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
9	chr2:98962800-98964800	Bivalent Enhancer	Spleen	Spleen
10	chr2:98962800-98965000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr2:98962800-98965000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
12	chr2:98962800-98965200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr2:98963200-98964600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:98963200-98964800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
15	chr2:98963200-98964800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:98963400-98964600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
17	chr2:98963400-98964600	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr2:98963400-98964800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
19	chr2:98963400-98965000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:98963400-98965600	Enhancers	Fetal Brain Male	brain
21	chr2:98963800-98964600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
22	chr2:98963800-98964800	Bivalent Enhancer	Fetal Stomach	stomach
23	chr2:98964000-98964600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:98964000-98964800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:98964000-98964800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:98964000-98964800	Bivalent Enhancer	Brain Angular Gyrus	brain
27	chr2:98964000-98964800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
28	chr2:98964200-98964600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
29	chr2:98964200-98964800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
30	chr2:98964200-98964800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
31	chr2:98964200-98964800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
32	chr2:98964200-98964800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
33	chr2:98964200-98964800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:98964200-98964800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
35	chr2:98964200-98964800	Bivalent Enhancer	Brain Substantia Nigra	brain
36	chr2:98964200-98965200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
37	chr2:98964200-98965400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:98964200-98965600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:98964400-98964600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:98964400-98964600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr2:98964400-98964600	Bivalent Enhancer	Primary B cells from cord blood	blood
42	chr2:98964400-98964600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:98964400-98964600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
44	chr2:98964400-98964600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
45	chr2:98964400-98964800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
46	chr2:98964400-98964800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
47	chr2:98964400-98964800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
48	chr2:98964400-98964800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
49	chr2:98964400-98964800	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:98964400-98965000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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