Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:98923237..98925927-chr2:98929072..98931912,2	MCF-7	breast:
2	chr2:98928630..98931023-chr2:98931186..98932811,2	MCF-7	breast:
3	chr2:98910828..98912979-chr2:98930336..98932005,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10172281	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10181000	0.96[ASN][1000 genomes]
rs10190679	0.93[ASN][1000 genomes]
rs10210685	0.98[ASN][1000 genomes]
rs13394706	0.96[ASN][1000 genomes]
rs13408372	0.96[ASN][1000 genomes]
rs13415414	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13427344	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13428221	0.96[ASN][1000 genomes]
rs13432099	0.93[ASN][1000 genomes]
rs1466944	0.85[ASN][1000 genomes]
rs17429208	0.96[ASN][1000 genomes]
rs2055591	0.93[ASN][1000 genomes]
rs2102270	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2292118	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3731659	0.81[ASN][1000 genomes]
rs4851124	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4851953	0.83[ASN][1000 genomes]
rs4851959	0.81[ASN][1000 genomes]
rs60924437	0.95[ASN][1000 genomes]
rs62156263	0.95[ASN][1000 genomes]
rs62156264	0.95[ASN][1000 genomes]
rs6715989	0.84[AMR][1000 genomes]
rs6742930	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6747410	0.83[ASN][1000 genomes]
rs6750975	0.81[ASN][1000 genomes]
rs6754222	0.96[ASN][1000 genomes]
rs72819909	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7571001	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7571110	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7580008	0.96[ASN][1000 genomes]
rs7586663	0.96[ASN][1000 genomes]
rs7606070	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98926600-98933200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:98926800-98932000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:98927000-98935000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:98927000-98936400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:98928800-98936600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:98930000-98933400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:98930400-98932600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:98930600-98933000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: