Variant report

Variant	rs4852276
Chromosome Location	chr2:72249411-72249412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10175844	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1105118	0.81[EUR][1000 genomes]
rs1543164	0.81[EUR][1000 genomes]
rs1543862	0.85[ASN][1000 genomes]
rs3860462	0.81[EUR][1000 genomes]
rs4405788	0.81[EUR][1000 genomes]
rs4852277	0.83[ASN][1000 genomes]
rs4852837	0.83[EUR][1000 genomes]
rs4852838	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6755787	0.83[EUR][1000 genomes]
rs6759217	0.83[EUR][1000 genomes]
rs883311	0.85[EUR][1000 genomes]
rs883312	0.85[EUR][1000 genomes]
rs908612	0.83[EUR][1000 genomes]
rs955788	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874260	chr2:72242013-72268093	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv874261	chr2:72242013-72270790	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv874262	chr2:72242013-72279514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72249200-72249800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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