Variant report

Variant	rs1543164
Chromosome Location	chr2:72235862-72235863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10175844	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10208040	0.98[ASN][1000 genomes]
rs1105118	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1105119	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11126353	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517396	0.85[ASN][1000 genomes]
rs1543165	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176407	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420045	0.96[ASN][1000 genomes]
rs3860462	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4405788	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4852276	0.81[EUR][1000 genomes]
rs4852831	1.00[ASN][1000 genomes]
rs4852832	1.00[ASN][1000 genomes]
rs4852833	0.98[ASN][1000 genomes]
rs4852836	0.86[ASN][1000 genomes]
rs4852838	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6726291	0.98[ASN][1000 genomes]
rs7572229	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7598575	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs883311	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs883312	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs908612	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs955788	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955789	1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72232600-72240600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:72233800-72237600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:72235200-72236200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr2:72235400-72236000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:72235400-72236200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:72235400-72236200	Enhancers	NHEK	skin
7	chr2:72235400-72236400	Enhancers	Hela-S3	cervix
8	chr2:72235400-72237400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:72235600-72236000	Enhancers	Esophagus	oesophagus
10	chr2:72235600-72236800	Enhancers	Fetal Muscle Trunk	muscle
11	chr2:72235800-72236200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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