Variant report

Variant	rs7572229
Chromosome Location	chr2:72235444-72235445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10175844	0.84[ASN][1000 genomes]
rs10208040	0.96[ASN][1000 genomes]
rs1105118	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1105119	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11126353	0.92[ASN][1000 genomes]
rs1517396	0.83[ASN][1000 genomes]
rs1543164	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1543165	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2176407	0.94[ASN][1000 genomes]
rs2420045	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3860462	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4405788	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4852831	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4852832	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4852833	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4852836	0.86[ASN][1000 genomes]
rs4852838	0.84[ASN][1000 genomes]
rs6726291	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7598575	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883311	0.94[ASN][1000 genomes]
rs883312	0.95[ASN][1000 genomes]
rs908612	0.95[ASN][1000 genomes]
rs955788	0.98[ASN][1000 genomes]
rs955789	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72227800-72235800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:72232400-72235600	Weak transcription	Esophagus	oesophagus
3	chr2:72232600-72240600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:72233800-72235600	Enhancers	Fetal Muscle Leg	muscle
5	chr2:72233800-72237600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:72235200-72236200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr2:72235400-72236000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:72235400-72236200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:72235400-72236200	Enhancers	NHEK	skin
10	chr2:72235400-72236400	Enhancers	Hela-S3	cervix
11	chr2:72235400-72237400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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