Variant report

Variant	rs883311
Chromosome Location	chr2:72239809-72239810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72230167..72232433-chr2:72239268..72242132,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10175844	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10208040	0.97[ASN][1000 genomes]
rs1105118	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1105119	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11126353	0.93[ASN][1000 genomes]
rs1517396	0.86[ASN][1000 genomes]
rs1543164	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1543165	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2176407	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2420045	0.92[ASN][1000 genomes]
rs3860462	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4405788	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4852276	0.85[EUR][1000 genomes]
rs4852831	0.96[ASN][1000 genomes]
rs4852832	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4852833	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4852836	0.84[ASN][1000 genomes]
rs4852838	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6726291	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7572229	0.94[ASN][1000 genomes]
rs7598575	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs883312	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs908612	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs955788	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs955789	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72232600-72240600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:72237400-72241400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:72237600-72243000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr2:72238200-72240200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:72239000-72240000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:72239800-72241200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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