Variant report

Variant	rs4852836
Chromosome Location	chr2:72250097-72250098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10175844	0.84[ASN][1000 genomes]
rs10208040	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1105118	0.83[ASN][1000 genomes]
rs1105119	0.84[ASN][1000 genomes]
rs11126353	0.84[ASN][1000 genomes]
rs1543164	0.86[ASN][1000 genomes]
rs1543165	0.86[ASN][1000 genomes]
rs2176407	0.87[ASN][1000 genomes]
rs2420045	0.82[ASN][1000 genomes]
rs3860462	0.82[ASN][1000 genomes]
rs4405788	0.86[ASN][1000 genomes]
rs4852831	0.86[ASN][1000 genomes]
rs4852832	0.86[ASN][1000 genomes]
rs4852833	0.84[ASN][1000 genomes]
rs4852838	0.84[ASN][1000 genomes]
rs6726291	0.87[ASN][1000 genomes]
rs7572229	0.86[ASN][1000 genomes]
rs7598575	0.86[ASN][1000 genomes]
rs883311	0.84[ASN][1000 genomes]
rs883312	0.84[ASN][1000 genomes]
rs908612	0.83[ASN][1000 genomes]
rs955788	0.86[ASN][1000 genomes]
rs955789	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874260	chr2:72242013-72268093	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv874261	chr2:72242013-72270790	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv874262	chr2:72242013-72279514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3584760	chr2:72249991-72271489	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72249800-72250200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:72249800-72250200	Enhancers	Adipose Nuclei	Adipose
3	chr2:72249800-72251400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:72250000-72250200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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