Variant report
| Variant | rs4852396 |
|---|---|
| Chromosome Location | chr2:76400985-76400986 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11895605 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12612816 | 0.81[EUR][1000 genomes] |
| rs13016424 | 0.83[EUR][1000 genomes] |
| rs1524215 | 0.83[EUR][1000 genomes] |
| rs1916871 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs371016 | 0.81[EUR][1000 genomes] |
| rs379749 | 0.81[EUR][1000 genomes] |
| rs380810 | 0.81[EUR][1000 genomes] |
| rs384304 | 0.81[EUR][1000 genomes] |
| rs389616 | 0.81[EUR][1000 genomes] |
| rs390189 | 0.81[EUR][1000 genomes] |
| rs390652 | 0.81[EUR][1000 genomes] |
| rs390687 | 0.81[EUR][1000 genomes] |
| rs394278 | 0.81[EUR][1000 genomes] |
| rs397424 | 0.81[EUR][1000 genomes] |
| rs403631 | 0.81[EUR][1000 genomes] |
| rs410367 | 0.81[EUR][1000 genomes] |
| rs416093 | 0.81[EUR][1000 genomes] |
| rs416264 | 0.81[EUR][1000 genomes] |
| rs421884 | 0.81[EUR][1000 genomes] |
| rs422600 | 0.81[EUR][1000 genomes] |
| rs432117 | 0.81[EUR][1000 genomes] |
| rs454793 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834265 | chr2:76275611-76450728 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv999645 | chr2:76317006-76451354 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv874311 | chr2:76389455-76492999 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76397400-76401400 | Enhancers | HepG2 | liver |
