Variant report

Variant	rs1916871
Chromosome Location	chr2:76395476-76395477
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10195421	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11895605	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13391277	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13413589	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1524210	0.87[EUR][1000 genomes]
rs1524215	0.88[CHB][hapmap];0.90[CHD][hapmap];0.90[TSI][hapmap]
rs1608591	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2901741	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35380447	0.87[EUR][1000 genomes]
rs4852396	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6709581	0.88[EUR][1000 genomes]
rs6756217	0.88[EUR][1000 genomes]
rs7595802	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv874311	chr2:76389455-76492999	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76394000-76397400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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