Variant report

Variant	rs6709581
Chromosome Location	chr2:76339746-76339747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10195421	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11895605	0.88[EUR][1000 genomes]
rs13016424	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13391277	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13413589	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1524210	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1524215	0.87[CHB][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1608591	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1916871	0.88[EUR][1000 genomes]
rs2901741	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs317291	0.83[ASN][1000 genomes]
rs35380447	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6756217	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7595802	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523475	chr2:76333150-76343190	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6709581	NID1	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76338600-76340600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:76338800-76340600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:76339000-76340200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:76339000-76340600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:76339200-76340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:76339200-76340400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:76339200-76340400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:76339400-76340400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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