Variant report

Variant	rs13016424
Chromosome Location	chr2:76339690-76339691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:76338514..76340857-chr2:76342428..76344349,2	K562	blood:
2	chr2:76291024..76293676-chr2:76337937..76340562,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10195421	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs12612816	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12615814	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13413589	0.81[EUR][1000 genomes]
rs1524210	0.80[ASN][1000 genomes]
rs1524215	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1608591	0.81[EUR][1000 genomes]
rs2901741	0.80[ASN][1000 genomes]
rs317291	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371016	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs375530	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs379749	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs380810	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs384304	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs389616	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs390189	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs390652	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs390687	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs394278	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs397424	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs403631	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs410367	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs410954	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs416093	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs416264	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs421884	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs422600	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs432117	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs454793	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4852396	0.83[EUR][1000 genomes]
rs6709581	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6756217	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523475	chr2:76333150-76343190	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76338600-76340600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:76338800-76340600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:76339000-76340200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:76339000-76340600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:76339200-76340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:76339200-76340400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:76339200-76340400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:76339400-76340400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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