Variant report
| Variant | rs13413589 |
|---|---|
| Chromosome Location | chr2:76349207-76349208 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:75874032..75875721-chr2:76349204..76351782,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000115364 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10195421 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11895605 | 0.88[EUR][1000 genomes] |
| rs13016424 | 0.81[EUR][1000 genomes] |
| rs13391277 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1524210 | 0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1524215 | 0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1608591 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1916871 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2901741 | 0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs317291 | 0.80[ASN][1000 genomes] |
| rs35380447 | 0.95[EUR][1000 genomes] |
| rs6709581 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6756217 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7595802 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834265 | chr2:76275611-76450728 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv999645 | chr2:76317006-76451354 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv961763 | chr2:76347246-76353798 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
