Variant report

Variant	rs13391277
Chromosome Location	chr2:76355736-76355737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10195421	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11895605	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13413589	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1524210	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1524215	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1608591	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916871	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2901741	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35380447	0.93[EUR][1000 genomes]
rs6709581	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6756217	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7595802	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76354000-76356400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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