Variant report

Variant	rs4854602
Chromosome Location	chr3:133752198-133752199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4077659	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854600	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854792	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57097766	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60575778	1.00[ASN][1000 genomes]
rs61655060	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6788985	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6794544	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73864035	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133748800-133754200	Weak transcription	Hela-S3	cervix
2	chr3:133749400-133752400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:133749400-133756800	Weak transcription	Pancreas	Pancrea
4	chr3:133749400-133758600	Weak transcription	Right Atrium	heart
5	chr3:133749800-133754200	Weak transcription	Fetal Intestine Small	intestine
6	chr3:133750200-133754800	Weak transcription	Esophagus	oesophagus
7	chr3:133750200-133755200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:133750600-133754400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:133751000-133754800	Weak transcription	Spleen	Spleen
10	chr3:133751000-133754800	Weak transcription	HUVEC	blood vessel
11	chr3:133751800-133752200	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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