Variant report

Variant	rs6788985
Chromosome Location	chr3:133736415-133736416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4077659	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854600	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854602	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854792	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57097766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60575778	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61655060	0.89[ASN][1000 genomes]
rs6794544	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73864034	0.83[AMR][1000 genomes]
rs73864035	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133712200-133745600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:133728600-133737800	Weak transcription	Left Ventricle	heart
3	chr3:133729200-133736600	Weak transcription	Stomach Mucosa	stomach
4	chr3:133730400-133737000	Weak transcription	Spleen	Spleen
5	chr3:133731000-133743400	Weak transcription	Lung	lung
6	chr3:133733200-133746600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:133733600-133736800	Weak transcription	Right Atrium	heart
8	chr3:133735800-133737200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:133736000-133737200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:133736400-133737400	Enhancers	Fetal Muscle Trunk	muscle
11	chr3:133736400-133737600	Enhancers	Gastric	stomach
12	chr3:133736400-133738000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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