Variant report

Variant	rs73864035
Chromosome Location	chr3:133748177-133748178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133683547..133684239-chr3:133747628..133748622,2	MCF-7	breast:
2	chr3:133646547..133649417-chr3:133747538..133750277,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221972	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4077659	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854600	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854602	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854792	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57097766	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60575778	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61655060	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6788985	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6794544	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73864034	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3426811	chr3:133747687-133750235	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133746200-133749200	Active TSS	Right Atrium	heart
2	chr3:133746400-133748200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
3	chr3:133746400-133748400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:133746600-133749200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:133746800-133748400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:133747000-133749000	Bivalent/Poised TSS	Colonic Mucosa	Colon
7	chr3:133747200-133748600	Flanking Active TSS	HUVEC	blood vessel
8	chr3:133747400-133748600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
9	chr3:133747400-133748800	Active TSS	Gastric	stomach
10	chr3:133747600-133748200	Bivalent Enhancer	Liver	Liver
11	chr3:133747600-133748200	Bivalent/Poised TSS	Small Intestine	intestine
12	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
14	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:133747600-133748400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
16	chr3:133747600-133748400	Flanking Active TSS	Esophagus	oesophagus
17	chr3:133747600-133748400	Bivalent/Poised TSS	Fetal Kidney	kidney
18	chr3:133747600-133748400	Flanking Active TSS	Pancreas	Pancrea
19	chr3:133747600-133748600	Flanking Bivalent TSS/Enh	Placenta	Placenta
20	chr3:133747600-133749000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
21	chr3:133747800-133748200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:133747800-133748200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:133747800-133748200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:133747800-133748200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:133747800-133748200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
26	chr3:133747800-133748200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:133747800-133748200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
28	chr3:133747800-133748200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr3:133747800-133748200	Flanking Active TSS	Lung	lung
30	chr3:133747800-133748200	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
31	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:133747800-133748400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
35	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
36	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
37	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
38	chr3:133747800-133748400	Bivalent/Poised TSS	Left Ventricle	heart
39	chr3:133747800-133748400	Flanking Active TSS	Right Ventricle	heart
40	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
41	chr3:133747800-133748600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
42	chr3:133747800-133748600	Flanking Bivalent TSS/Enh	HepG2	liver
43	chr3:133747800-133749200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
44	chr3:133747800-133749400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
45	chr3:133747800-133749600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
46	chr3:133747800-133749800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
47	chr3:133748000-133748200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:133748000-133748200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
49	chr3:133748000-133748200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
50	chr3:133748000-133748200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--

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