Variant report

Variant	rs4854740
Chromosome Location	chr3:133382073-133382074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133378019..133382399-chr3:133522860..133528810,6	K562	blood:
2	chr3:133380350..133382601-chr3:133523415..133526726,4	K562	blood:
3	chr3:133381600..133383745-chr3:133425262..133426763,2	K562	blood:
4	chr3:133379614..133382648-chr3:133523517..133526970,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144867	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2589272	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2589277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2718800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718801	0.86[ASN][1000 genomes]
rs2718805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718810	0.88[EUR][1000 genomes]
rs58174274	1.00[EUR][1000 genomes]
rs61449352	1.00[EUR][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133381400-133382400	Weak transcription	Spleen	Spleen
2	chr3:133381400-133382600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:133381400-133382600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:133381400-133382800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:133381400-133383000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:133381400-133383000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:133381400-133392400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:133381600-133382400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:133381600-133382400	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:133381600-133382400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:133381600-133382400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:133381600-133382400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:133381600-133382400	Weak transcription	Pancreas	Pancrea
14	chr3:133381600-133382400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:133381600-133382400	Weak transcription	NH-A	brain
16	chr3:133381600-133382600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:133381600-133382600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:133381600-133382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:133381600-133382600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:133381600-133382600	Weak transcription	Ovary	ovary
21	chr3:133381600-133382600	Weak transcription	A549	lung
22	chr3:133381600-133382800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:133381600-133382800	Enhancers	Primary T cells from cord blood	blood
24	chr3:133381600-133382800	Enhancers	Primary hematopoietic stem cells	blood
25	chr3:133381600-133382800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr3:133381600-133382800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr3:133381600-133382800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:133381600-133382800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:133381600-133382800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:133381600-133382800	Enhancers	Brain Substantia Nigra	brain
31	chr3:133381600-133382800	Enhancers	Colon Smooth Muscle	Colon
32	chr3:133381600-133382800	Enhancers	Fetal Intestine Large	intestine
33	chr3:133381600-133382800	Enhancers	Fetal Muscle Leg	muscle
34	chr3:133381600-133382800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr3:133381600-133382800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr3:133381600-133382800	Enhancers	Hela-S3	cervix
37	chr3:133381600-133382800	Enhancers	HMEC	breast
38	chr3:133381600-133382800	Enhancers	HUVEC	blood vessel
39	chr3:133381600-133382800	Enhancers	NHDF-Ad	bronchial
40	chr3:133381600-133383000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr3:133381600-133383000	Enhancers	Primary B cells from peripheral blood	blood
42	chr3:133381600-133383000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:133381600-133383000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr3:133381600-133383000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr3:133381600-133383000	Enhancers	Fetal Intestine Small	intestine
46	chr3:133381600-133383000	Enhancers	Fetal Kidney	kidney
47	chr3:133381600-133383000	Enhancers	Thymus	Thymus
48	chr3:133381600-133383200	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr3:133381600-133383200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr3:133381600-133383200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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