Variant report

Variant	rs58174274
Chromosome Location	chr3:133353022-133353023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133352107..133353925-chr3:133378380..133381252,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242337	Chromatin interaction
ENSG00000163781	Chromatin interaction

rs_ID	r²[population]
rs2589272	0.94[EUR][1000 genomes]
rs2589277	1.00[EUR][1000 genomes]
rs2718800	1.00[EUR][1000 genomes]
rs2718805	1.00[EUR][1000 genomes]
rs2718810	0.88[EUR][1000 genomes]
rs4854740	1.00[EUR][1000 genomes]
rs61449352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:133316600-133377600	Strong transcription	Dnd41	blood
3	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
10	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
12	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:133327000-133362400	Weak transcription	Small Intestine	intestine
18	chr3:133328000-133356400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:133329200-133358400	Weak transcription	Fetal Heart	heart
20	chr3:133329400-133358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:133332200-133378600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:133333400-133378000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr3:133334000-133359200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:133334200-133378400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:133334400-133368800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr3:133334600-133363200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:133334800-133354400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:133334800-133367200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:133337400-133380000	Weak transcription	Pancreas	Pancrea
30	chr3:133338400-133359000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr3:133338600-133368600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:133338800-133363400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:133339600-133356200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:133339800-133378000	Strong transcription	Primary B cells from cord blood	blood
35	chr3:133340200-133380000	Weak transcription	Right Ventricle	heart
36	chr3:133341200-133378800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr3:133342400-133355600	Weak transcription	Fetal Kidney	kidney
38	chr3:133342800-133361200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr3:133343200-133355400	Weak transcription	Brain Substantia Nigra	brain
40	chr3:133344800-133359000	Strong transcription	HSMM	muscle
41	chr3:133345000-133364400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:133345600-133380000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:133345600-133380000	Weak transcription	Psoas Muscle	Psoas
44	chr3:133345800-133356200	Weak transcription	Osteobl	bone
45	chr3:133346600-133368800	Strong transcription	GM12878-XiMat	blood
46	chr3:133347200-133354400	Strong transcription	Fetal Stomach	stomach
47	chr3:133347600-133361200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr3:133348200-133353600	Weak transcription	NHDF-Ad	bronchial
49	chr3:133348400-133356000	Weak transcription	Brain Anterior Caudate	brain
50	chr3:133349000-133353200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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