Variant report

Variant	rs4855499
Chromosome Location	chr3:68766552-68766553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11128087	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504297	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1602195	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2221394	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2313851	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4855498	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6549141	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6549143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap]
rs6775453	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6795777	0.82[EUR][1000 genomes]
rs6796615	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs867310	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9681520	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9682904	0.80[AMR][1000 genomes]
rs971382	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836496	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9841811	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3863	chr3:68720921-68769064	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68765800-68766600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:68766000-68766600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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