Variant report

Variant	rs9682904
Chromosome Location	chr3:68793738-68793739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11128087	0.83[AMR][1000 genomes]
rs1504297	0.80[AMR][1000 genomes]
rs1602195	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2313851	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4855498	0.80[AMR][1000 genomes]
rs4855499	0.80[AMR][1000 genomes]
rs6549141	0.85[AMR][1000 genomes]
rs6549143	0.84[CEU][hapmap]
rs6775453	0.85[AMR][1000 genomes]
rs6796615	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867310	0.81[AMR][1000 genomes]
rs9681520	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs971382	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9836496	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9841811	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68789400-68801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68790600-68795400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:68791200-68794800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:68793600-68794200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:68793600-68794600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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